iParameterEstimation
iParameterEstimation is a highly configurable maximum likelihood parameter estimation package for generalized Hidden Markov Models. Specific configuration files are included for training Twinscan, N-SCAN and their EST variants.
Note: This software requires the eval package, available here.
Releases
- Version 0.3.1
- Support for N-SCAN
- Improved gHMM format
- More example gHMMs
- Full 125-page documentation
- Improved make_instance_file_script
- File redirection of messages and warnings
- New emission models
- ipe-0.3.1.tar.gz - Source tarball (9f8dbf32d9f04cff516e86981a7ebcfd)
- iPE-User-Guide_.pdf - User documentation (e76315751958506f2515e3503da6d8e0)
- perl-ipe-0.3.1-1.i386.rpm - 32-bit RPM (3623feec923a5ece0dcd503b3810d8a8)
- perl-ipe-0.3.1-1.x86_64.rpm - 64-bit RPM (e391d7019e59bdaa8120a04e73d5d05e)
- ipe-perl_0.3.1_i386.deb - Debian binary package (05a89126486872cd2b7262290b4d79ff)
- Version 0.1.48
- Addition of JUMPLUT model
- Support for estimating alternative splicing states
- Warnings and messages are now in separate streams
- More verbose warnings
- Addition of Debian deb package
- ipe-0.1.48-1.i386.rpm - i386 rpm (2020f77e69cdcb4e46a19620009d18d1)
- ipe-0.1.48-1.x86_64.rpm - x86_64 rpm (c0f45dc05ba96f5bd47596b7a0d12769)
- ipe-0.1.48.tar.gz - Src tarball w/ installer (28ba551698f26d241c833502e0e751fb)
- ipe-perl_0.1.48_i386.deb - Debian deb package (fda612645ea3781448763bae86fbe09f)